Need1.5-2x107cellsfroma2dayculture. 1.Cellsareharvestedasnormal,washedx1inPBSthentakenupatconc.of1.2x107cells/mlincoldPBS. 2.Takex2Bioradcurvettes A.0.9ml(107cells) B.0.167mlcells(2x106cells)+0.73mlPBS ToAadd15uglinearisedplasmidDNA,IMMEDIATELYpriortoelectroporation.. BnoDNA 3.UsingaBioradGenePulser,(McMahon,A.P.,andBradley,A.(1990)Cell621073-1085). "Zap"eachcurvettetwicei.e.500uF230Vthen500uF240V 4.ASAPusingapasteurPipettetransfercellsfromcurvette Atoa10mltubecontaining4mlsmedium,thenplate5x1mlcellsontofive10cmdiapetridishescontainingNeoPMEF"sand10mlmedium.Labelplates4-8. Btoa10mltubecontaining1mlmedium,thenplateallontoa10cmdiapetridishcontainingNeoPMEFsand10mlmedium.Labelplate2. 5.Setupfollowingcontrolplates. a)Take0.167ml(2x106cells)originalcellsUSPension_10cmdiapetridishcontainingNeoPMEF"sand10mlmedium.Labelplate3. b)Take0.167ml(2x106cells)into10mlmedium(~2x105cells/ml).Plate0.1ml(2x104cells)ontoNeoPMEF"sin10cmpetridishwith10mlsmedium.Labelplate1. 6.AllplatesincubatedinCO2incubatorovernight. 7.Nextdayapprox.24hrsafterelectroporationplatesreceiveappropriateselectionmedium. *NBifplasmidcontainsaTKpromoterandpositive,negativeselection(PNS)isusedtheseplatesalsoreceiveGancyclovirorFIAUaswellasG418. Mediumischangedonallplatesevery48hrs.By3daysnonG418resistantclonesshouldbedyingoff,afteroneweekthereshouldbenoclonesonPlates2&3.Ifthereareclonespresenttheexperimentisinvalid.After6-7daysthecoloniesonplates5-8(plates6-8ifPNSisused)arereadyforharvesting.Forefficientpickingofsingleclonesthereshouldbenomorethanapprox.100colonies/plate. Pickingofsinglecolonies PlatesaretreatedoneatatimeandasquicklyaspossIBLe.RemovemediumwashwithPBS.Don"twashwithPBS/EGTAasthiscausesthefeederstoliftoffandtheEScellcoloniestofloatawayandbreakup. AddasmallvolumeofPBStoplate,holdplateoverapieceofblackcardboard,usingaP-200GilsonpickcolonybringingwithitthesmallestpossiblevolumeofPBS.Pick6coloniesinsuccessionintoa96wellplatecontaining20ulTRYPSIN/EDTA.Checkusingmicroscopethattherearesinglecoloniesineachwell.Usingamultichannelpipettecoloniesaredispersedbypipettingupanddown40xinacircularmotionbeingcarefulnottomakebubblesasthesecausecelldeath,checkthatcoloniesaredispersed.Cellsarethentransferredtoa96welltray,containingNeoPMEF"s.Thisprocessisrepeateduntilallcloniesarepicked.After3-4daysclonesshouldbereadyforsplittingandfreezingdown. SplittingandFreezingdownofclones Treatingonerowatatime(theremaybeclonesthatarenotready),removemediumusingaspiratorandsterilepasteurpipette,washeachwellwith0.1mlPBS,aspirate,washwith0.1mlPBS/EGTA,aspirate,add40ulTRYPSIN/EDTA,usingamultichannelpipettedispersecellsasbefore,transfer25ulinto96wellplatecontaining10%DMSOinmedium.ThenusingaGilsonandasteriletiptransferremainingcellstoa24wellplatewith1mlmediumwithLIF(nofeeders)ineachwell,24wellsarepre-treatedwith0.5mlgelatin/PBS.TheseculturesareforDNAisolationforSouthernanalysis. Onceentiretrayiscomplete,the96welltrayistapeduparoundtheedge,occupiedwellsarerecordedonrecordsheetandtrayisthenputintoapre-chilledfoamboxat-70.Onceculturesarefrozen>2hrsthetraysaretransferredtoaneskyat-80andstoreduntilSouthernanalysisiscomplete. IsolationofDNAfrom24Wellplates Onceculturesarealmostcofluent,(itdoesn"tmatterifthecoloniesareverylargeorifsomeofthecellshavedifferentiated,asthiswon"teffecttheDNA),theyarereadyforharvesting. 1.Removemediumusingaspiratorandpasteurpipette. 2.Washeachwellx2with0.5mlPBS. 3.Add0.2ml6MGuanidineHCl/NaAcsolution,cellslysealmostimmediately. 4.Usingapasteurpipetteandarubberteat,slowlysuckuptheviscoussolution.ItisimportanttodothisslowlyotherwisetheDNAwillshear.TransferthesolutionintoalabelledEppendorftube.Thetubesarethentapedintoaneppendorfrackandtapedtothewheeltomixovernight. 5.Nextday,inlotsof12or20dependingonsizeofrackused,add500ulAbsEtOHtoeachtubeusingapipetteaidanda5mlpipette.Mixeachtubebyinversion(don"tvortex)untilDNAprecipitates. 6.Prepareaseriesoftubescontaining250ul70%EtOH,thiscanbedispensedusingmultipetteeppendorf,andalabelledserieswith200ulTEineach,alsodispensedusingthemultipetteeppendorf. UsingaglasscapillarytubeandholdingyourforefingerovertheendtoavoidtransferringEtOHalongwiththeDNA,scoopouttheDNA,stillholdingfingerovertheendofthetubedipDNAinto70%EtOH,wrigglearoundtowashtheDNAthentransferDNAintotubecontainingTE.DNAshouldcomeofftheendjustbywrigglingthetubing,ifnotclosethelidontotheglassandsnapofftheexcess,leavingtheDNAattachedtotheglass. NB.ThetransferoftheDNAbetweentubesmustbedonequickly,especiallythestepbetweentheAbsEtOHandthe70%EtOHastheDNAdriesoutveryquicklyandisthenvirtuallyimpossibletoredissolve. 7.TodissolvetheDNA,tubesareplacedinrackstapedtothebottomoftheshakerincubatorinthe32Plabandshakenovernightonspeed10@50.Thesolutionshouldbeslightlyviscous,theremaybesomeundissovleddebrisinthetube,thiswillbreakupbypipettingitupanddown.Itdoesnotinterferewiththerestrictionenzymedigestion. 8.75ulofdigestedDNAisenoughforSouthernanalysis.ThisleavesenoughforarepeatSouthernifnecessary. G418(Geneticin,Gibco-BRL11811-031)need150ug/mlactive(however,eachbatchshouldbetested.MakeupX100inPBSandfiltersterilize. NB.Eachbatchhasnumberofugs/mgactivewrittenonvial,youneedtoallowforthiswhenmakingyourcalculation. FIAU(1-[2-deoxy,2fluoro-?D-arABInofuranosyl]-5iodouracil) Ineppendorfsin-80(Madeupas2000X) Workingconcentration=0.2uM. Gancyclovir.FreezedriedpowderformSyntex.$57.71/vialRMHpharmacy. 6MGuanidine-HCl,0.1MNaAc(pH5.5) 57.36g/100mls add1/303MNaAcpH5.5Plates NoofCells EP Media Treatment Treatment 1 2x104 NoEP Normal Counting&platingefficiency 2 2x106 EPNoDNA Normal %survivalafterEP 3 2x106 NoEP G418 %G418resistantclonesinstock 4 2x106 EP+DNA Normal %survivalafterEP+DNA 5 2x106 EP+DNA G418 %totalintegrantsierandom+H/R"s 6 2x106 EP+DNA G418* SameasPlate5unless 7 2x106 EP+DNA G418* GancyclovirorFIAUwasused- 8 2x106 EP+DNA G418* ifsothenintheoryallshouldbeH/Revents(thisisnotthecase!)